Landscape and climate factors can predict prevalence of Lyme disease bacteria

Photo: Black legged ticks
Black legged ticks, or Ixodes scapularis, are the vector of Lyme disease. Work by a team of Penn scientists and colleagues has led to predictive models that can forecast the prevalence and distribution of ticks infected with Borrelia burgdorferi, the bacteria that causes Lyme disease. (Image: Michael Benjamin)


Predicting Lyme disease hotspots can help public health officials guide resources and proactive messaging to the public. But the ecology of the disease is complex, involving various host animals, black-legged ticks that serve as a disease vector, the disease-causing agent itself, the bacteria Borrelia burgdorferi, and the environment in which they all live.

The study, published in the Journal of Applied Ecology, untangles the relationship between two of these players in Lyme disease ecology: bacteria and the environment. Led by Tam Tran, who earned her doctoral degree in Penn’s Department of Biology in the School of Arts & Sciences, and with mentors Dustin Brisson, a professor in the department, Shane Jensen of the Wharton School, along with colleagues from the New York State Department of Health, the research investigates how variables such as landscape disturbance and climate affect the distribution and abundance of B. burgdorferi. The result is a powerful analytical model that can predict with accuracy the prevalence and distribution of the Lyme disease bacteria on the landscape, potentially a useful public health tool to help mitigate disease transmission.

Photo: Tam Tran
Tam Tran completed her Ph.D. in the Biology Department and is now pursuing her M.D. at Virginia Commonwealth University. (Image: Courtesy of Tam Tran) 


“We know Lyme disease is a growing threat to public health, yet we haven’t found great ways of addressing it. The number of cases keeps growing,” says Tran, now a medical student at Virginia Commonwealth University. “What’s exciting here is that, by knowing how the environment affects both the tick system and the bacteria, we can predict where and when there will be higher amounts of the pathogen in the landscape.”

In the current study, Tran, Brisson, Jensen, and colleagues focused primarily on what factors influenced B. burgdorferi, the prevalence of which they measured by determining what fraction of blacklegged ticks they sampled were infected with the bacteria. Older attempts to draw connections between Lyme disease and environmental variables have resulted in mixed, unclear, or sometimes even contradictory results, Tran says, in part because the contributions of the “environment” writ large can be so multifaceted.

To build their models, the research team took data collected from nearly 19,000 black-legged ticks between 2009 and 2018 across hundreds of sites within New York state. They assessed how numbers of infected and uninfected ticks at hundreds of locations over more than a decade aligned with local environmental features falling in four broad categories:

1) landscape factors such as elevation, fire history, and distance to infrastructure like roads;

2) vertebrate host population sizes, including people, bears, birds, and deer;

3) surveillance conditions including local temperature and humidity at the time of collection as well as the effort devoted to collecting specimens; and

4) climate measures such as monthly temperature averages, precipitation, and days with below-freezing temperatures.

Running various groupings of these variables through powerful computer models, the researchers could tease out which ones were most influential in determining infectivity rates.

“The main finding was that climate was an overwhelming feature in the model,” Tran says. “Habitat disturbance was also important, and we found the opposite of what has come out of earlier studies in some cases.”

Photo: Dustin Brisson
Dustin Brisson, a biologist in the School of Arts and Sciences, studies the ecological and evolutionary trends of the bacteria that causes Lyme disease and ofIxodes scapularis, the black-legged tick that carries it. (Image: Denise Henhoeffer)


While previous analyses had found that increases in disturbance—things like fires, roads cutting through forests, and fragmented habitat tracts—led to increases in B. burgdorferi numbers, the Penn-led team found that less disturbed, more intact habitats were often associated with greater numbers of ticks infected with the bacteria.

After developing a model with the data collected in 2009-18, they then tested to see how well the model could predict the prevalence and distribution found in the data collected from 2019.

“We found it was highly accurate,” Tran says. “And what’s great is that a lot of the data we used to create the model is free, meaning that other localities might be able to replicate these findings to help predict Lyme disease risk, especially in areas where the climate and landscape is similar to New York.”

Interventions could be public health messaging warning park visitors, for example of the risk of disease, “reminding them to do their tick checks,” says Tran. The findings could also help guide future land management, harnessing the power of ecology to potentially reduce Lyme disease risks.

Tam Tran earned a Ph.D. from the University of PennsylvaniaSchool of Arts & Sciences’ Department of Biology. She is currently an M.D. student at Virginia Commonwealth University.

Dustin Brisson is a professor in Penn’s Department of Biology in the School of Arts & Sciences.

Shane Jensen is a professor of statistics and data science in Penn’s Wharton School.

Tran, Brisson, and Jensen’s coauthors on the study were New York State Department of Health’s Melissa Prusinki, Jennifer White, Richard Falco, John Kokas, Vanessa Vinci, Keith Tober, Jamie Haight, JoAnne Oliver, Lisa Meehan, Elyse Banker, and Bryon P. Backenson; the USDA Animal & Plant Health Inspection Service’s Wayne Gall; and Paul Smith’s College’s Lee Ann Sporn.

The work was supported by the New York State Department of Health, National Institutes of Health (grants AI097137, AI142572, AI137433, AI55400, and AI133871), Centers for Disease Control and Prevention (Grant U01CK000509), and Burroughs Wellcome Fund (Grant 1012376).


Photo: Black legged ticks