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publications
Morlon H, Parsons T, Plotkin JB. Reconciling molecular
phylogenies with
the fossil record. PNAS 108: 16327–16332 (2012) [pdf][cover]
Der R, Epstein C, Plotkin JB. Generalized population
models and the nature of genetic drift. Theoretical Population
Biology 80: 80–98 (2011) [pdf]
Kryazhimskiy S, Draghi J, Plotkin JB. In evolution, the
sum is less than its parts. Science 332: 1160-1161
(2011) [pdf]
Kryazhimskiy S, Dushoff J, Bazykin G, Plotkin JB.
Prevalence of epistasis in the evolution of influenza A surface
proteins. PLoS Genetics 7: 1001301 (2011) [pdf]
Plotkin JB, Kudla G. Synonymous but not the same: the
causes and consequences of codon bias. Nature Reviews Genetics
12:32-42 (2011) [pdf]
Draghi J, Parsons T, Wagner G, Plotkin JB. Mutational
robustness can facilitate adaptation. Nature 426:
353–355 (2010) [pdf]
Morlon H, Potts M, Plotkin JB. Inferring the dynamics of
diversification: a coalescent approach. PloS Biology
8: 1000493 (2010) [pdf]
Kudla G, Murray AW, Tollervey D, Plotkin JB.
Coding-sequence determinants of gene expression in Escherichia coli. Science 324:
255-258
(2009)
[pdf]
Kryazhimskiy S, Tkacik G, Plotkin JB. The dynamics of
adaptation on correlated fitness landscapes. PNAS
106: 18638-18643 (2009) [pdf]
Goldstein E, Dushoff J, Ma J, Plotkin JB, Earn DJ,
Lipsitch M. Reconstructing influenza incidence by deconvolution of
daily mortality time series. PNAS 106: 21825–21829
(2009) [pdf]
Kryazhimskiy S, Plotkin JB. The population genetics of
dN/dS. PLoS Genetics 4: 1000304 (2008) [pdf]
Dushoff J, Plotkin JB, Levin SA, Earn DE. Dynamic
resonance can explain the seasonality of influenza incidence. PNAS
101: 16915-16916 (2004) [pdf]
Plotkin JB, Robins H, Levine A. Tissue-specific codon
usage and the expression of human genes. PNAS 101:
12588-12591 (2004) [pdf]
Plotkin JB, Dushoff J, Fraser HB. Detecting selection
using a single genome sequence of M. tuberculosis and P. falciparum. Nature
428: 942-945 (2004) [pdf]
Plotkin JB, Dushoff J. Codon bias and
frequency-dependent selection on the hemagglutinin epitopes of
Influenza A virus. PNAS 100: 7152-7157 (2003) [pdf]
Plotkin JB, Dushoff J, Levin SA. Hemagglutinin sequence
clusters and the antigenic evolution of Influenza A virus. PNAS
99: 6263-6268 (2002) [pdf]
Krakauer D, Plotkin JB. Redundancy, anti-redundancy, and
the stability of genomes. PNAS 99: 1405-1409 (2002)
[pdf]
Plotkin JB, Potts M, Yu D, Bunyavejchewin S, Condit R,
Foster R, Hubbell S, LaFrankie J, Manokaran N, Seng L, Sukumar R, Nowak
MA, Ashton PS. Predicting species diversity in tropical forests. PNAS
97: 10850-10854 (2000) [pdf]
Nowak M, Plotkin JB, Jansen V. The evolution of
syntactic communication. Nature 404: 495-498 (2000) [pdf]
Pubmed Articles
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